Maq short read aligner errors

Error: maq: match.cc:516: int ma_match(int, char**): Assertion `fp_bfq_l’ failed
Solution: Wrong file, gave a .fq instead of .bfq as input. Give maq an .bfq and error will be gone.

Error: [ma_longread2read] encoding reads… maq: read.cc:106: match_info_t* ma_longread2read(const longreads_t*): Assertion `matches’ failed.
Solution: Too many reads, gave 17M reads. Split file in 3M reads chunks.

One thought on “Maq short read aligner errors

Leave a Reply

Fill in your details below or click an icon to log in:

WordPress.com Logo

You are commenting using your WordPress.com account. Log Out / Change )

Twitter picture

You are commenting using your Twitter account. Log Out / Change )

Facebook photo

You are commenting using your Facebook account. Log Out / Change )

Google+ photo

You are commenting using your Google+ account. Log Out / Change )

Connecting to %s