Error: maq: match.cc:516: int ma_match(int, char**): Assertion `fp_bfq_l’ failed
Solution: Wrong file, gave a .fq instead of .bfq as input. Give maq an .bfq and error will be gone.
Error: [ma_longread2read] encoding reads… maq: read.cc:106: match_info_t* ma_longread2read(const longreads_t*): Assertion `matches’ failed.
Solution: Too many reads, gave 17M reads. Split file in 3M reads chunks.